PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1027561g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 463aa    MW: 51172.4 Da    PI: 5.1004
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1027561g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99e-35261172102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d +++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  PDK_30s1027561g002  26 FLSKTYDMVDDLSTDAIVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 107
                         9*********************99*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  PDK_30s1027561g002 108 LLKTINRRKP 117
                         *******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3820110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3421115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-6222115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDADGGGEGT AAGANAGLGG NAPPPFLSKT YDMVDDLSTD AIVSWGPGNN SFVVWNTPEF  60
ARDLLPKYFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK TINRRKPVQT  120
HRQAQQSQAQ DTNVAACVEV GKFGLEEEIE MLKRDKNVLM QELVRLRQQQ QATDNQFHTL  180
GQRLQGMEQR QQQMMSFLAK AMQSPEFLAQ LVQQNDNNRR ITGVNRKRQS PTQVNKLDGE  240
STTPDGQIIK YLPLMNEAAK AMLMQILKYD ASPRLESLGN PENFLVENLA SLLQAFDGRS  300
SSSRNSGVTL SKVPTISGTP YLPPSSGFSA ISSSSAPSEI QSSASVAGMV STAELPKMSM  360
LSRAPKAISQ QTDTSISEFS QMEGVVPNDN AVGVSSENHV QPEAECIYMN PISAVMDDQV  420
PIETDNIHEA KEMKPEWENG WDSAENMDHL TERMGFLASL NKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-262411518120Heat shock factor protein 1
5d5u_B1e-25711517129Heat shock factor protein 1
5d5v_B1e-25711517129Heat shock factor protein 1
5d5v_D1e-25711517129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802552.10.0PREDICTED: heat stress transcription factor A-1-like
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0KLP90.0A0A0E0KLP9_ORYPU; Uncharacterized protein
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-113heat shock transcription factor A1D